Webb2 aug. 2024 · We apply HISAT2 for HLA typing and DNA fingerprinting; both applications form part of the HISAT-genotype software that enables analysis of haplotype-resolved genes or genomic regions.... Webb9 mars 2015 · Tests showed that HISAT is the fastest system currently available, with equal or better accuracy than any other method, and requires only 4.3 gigabytes of memory. HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing experiments. HISAT uses an …
hisat2-software [ILRI Research Computing] - CGIAR
Webb15 dec. 2024 · We apply HISAT2 for HLA typing and DNA fingerprinting; both applications form part of the HISAT-genotype software that enables analysis of haplotype-resolved … Webbboth applications, HISAT-genotype not only improves upon earlier computational methods, but matches or exceeds the accuracy of laboratory-based assays. One Sentence Summary HISAT-genotype is a software platform that has the ability to genotype all the genes in an individual's genome within a few hours on a desktop computer. liberty cream colorker
Transcript-level expression analysis of RNA-seq experiments with HISAT …
WebbHISAT-genotype is a next-generation platform that enables rapid and accurate genomic analysis of our genomes using next-generation sequencing data on a desktop within a … Webb6 juni 2024 · In this paper, we describe HISAT-3N (hierarchical indexing for spliced alignment of transcripts - 3 nucleotides), which rapidly and accurately aligns sequences consisting of nucleotide conversions by leveraging powerful hierarchical index and repeat index algorithms originally developed for the HISAT software. http://ccb.jhu.edu/software.shtml liberty craftworks greenfield village